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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300002053 Open in IMG/M |
| Scaffold ID | SMTZ23_10011729 Open in IMG/M |
| Source Dataset Name | Marine sediment microbial communities from White Oak River estuary, North Carolina - WOR_SMTZ |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 15424 |
| Total Scaffold Genes | 19 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 15 (78.95%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Intertidal Zone → Sediment → Marine Sediment → Marine Sediment Microbial Communities From White Oak River Estuary, North Carolina |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | White Oak River estuary, North Carolina, USA | |||||||
| Coordinates | Lat. (o) | 34.6478111 | Long. (o) | -77.1112083 | Alt. (m) | Depth (m) | .24 to .32 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F030967 | Metagenome | 183 | Y |
| F079544 | Metagenome | 115 | Y |
| F102444 | Metagenome / Metatranscriptome | 101 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| SMTZ23_1001172910 | F079544 | N/A | MFSISIGLFLAFFDYNLAIHEQMKIEDERSQEKIILSKLELDNQTLYLSNIVVKNGGTIEVKIRAIYVSNSTMTTFICDPSTYITPSNYSRINLTSHRVPFEPNAKIIAATERGIKTKEYEALLIYSLEPPWDHDPTKLYIGPLMLQFDAFWYRKTSEDGTLDPNDPWRPGWSIPKGFGYCAWNITVKNIDDRNITINRFSTFNVVPNDSPSNQLPWYLEPTNQTSLTQFLPVNQTQNILYVWADPKEASGTNRPQKMTLPECTCMVFLTFFGVFHEHDGATTTYAQTIPFEAAITVVG* |
| SMTZ23_1001172911 | F102444 | GGTGG | LKTNSNCKALSPIFATLIILAIVTVLFIPVFIWSTGLTAETESFWHVSGEIATERIVIEEVNLRGGIPSCTIYVRNIGKTAIIVDDVFISSPNGSLNIYGKADFISDPDSVVQGDLITITISDLGSFVPLGNVTYTVKVFTSRGVGDTYQVVA* |
| SMTZ23_1001172916 | F030967 | AGG | MQSLEEFEKRIEKLEKHEFEDTLTLLEILSTITFFGGLKMKKCKYAKEGQCGLFFLKSNAKKKTPIATDCRIKDCEGEPGHCHLELSNVTCAFCPECLPNQHTKRDPE* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |