Scaffold SMTZ1_10001276

Overview

Basic Information

• Taxon OID: 3300002052
• Scaffold ID: SMTZ1_10001276
• Source Dataset Name: Marine sediment microbial communities from White Oak River estuary, North Carolina - WOR-1-36_30
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 24971
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (62.50%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Sediment → Marine Sediment → Marine Sediment Microbial Communities From White Oak River Estuary, North Carolina

Source Dataset Sampling Location

• Location Name: White Oak River estuary, North Carolina, USA
• Coordinates
  • Lat. (^o): 34.640199
  • Long. (^o): -77.109447

Associated Families

Family	Category	Number of Sequences	3D Structure?
F093163	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
SMTZ1_1000127627	F093163	AGGAG	MERKDPIERAYELIGQPIDPNLRCPVELADIVDYKESEPGETIEYFASDRSDVDDIYAADANGGLTLHKLTLGTPTALTFVGLQSKLEYVLIDEILNSKDQTALAAKKDGIIRAMDKEEVRRIFNVILAIASQEVTKDSGEDILDVIIKMKQKVSNYATDYILLVASDVMDEIEKYDKENANNFNYRLAIKEEIAKLGINKIVKVIGEVNSTAVLANGKAILVGRDSTLAQGRPIKMRRRKFSGEIAEMSGAEEGAVRLVSVARTPQIVNADGKNTLGYGTFGYESVIEVVTNYRAVCWADSLV*