NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold GOScombined01_104822617

Scaffold GOScombined01_104822617


Overview

Basic Information
Taxon OID3300002040 Open in IMG/M
Scaffold IDGOScombined01_104822617 Open in IMG/M
Source Dataset NameGS000c - Sargasso Station 3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterJ. Craig Venter Institute (JCVI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3421
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location
Location NameMoorea, Outside Cooks Bay, Polynesia Archipelagos
CoordinatesLat. (o)-17.475834Long. (o)-149.81223Alt. (m)Depth (m)1.4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F044811Metagenome154N

Sequences

Protein IDFamilyRBSSequence
GOScombined01_1048226173F044811GGTGGMWRHWIGLPHKFRADPRNGHAADCLIMTWNVLEDAGVPHPPFDPIWLDLAESGKHRLLARAYERLTIPLDAPEEYAVTLFSTDRTIGIGVVVDGGLLHVHHRRGVQWMPLDRCKPLEFRKFT*

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