NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold GOScombined01_104620661

Scaffold GOScombined01_104620661


Overview

Basic Information
Taxon OID3300002040 Open in IMG/M
Scaffold IDGOScombined01_104620661 Open in IMG/M
Source Dataset NameGS000c - Sargasso Station 3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterJ. Craig Venter Institute (JCVI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1413
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location
Location NameMoorea, Outside Cooks Bay, Polynesia Archipelagos
CoordinatesLat. (o)-17.475834Long. (o)-149.81223Alt. (m)Depth (m)1.4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021885Metagenome / Metatranscriptome217Y
F049303Metagenome / Metatranscriptome147Y
F090093Metagenome108N
F091957Metagenome107N

Sequences

Protein IDFamilyRBSSequence
GOScombined01_1046206611F090093GAGGMNVRTIVVIACLYVAFFGLPNIELPNVQPPAPETPDVREPTAEMQKAVADVADICERMDAFDRLVWMSTWEDCSAIVAGEDKDVSVAFDNTLGLRLFTDSTFNVAWSRLANASGRYRGLGEAVEKAFTEVIG
GOScombined01_1046206612F049303AGGMSTFLDDPIRVLAVVAAAAVLLVPYLPAIAKRLRAAWASLPSVPKPPADGIGVSDLTMVLDLANRLRLDGHEKATDLAKQLLDAMLEVPQK*
GOScombined01_1046206613F021885AGGAGMNIFEKLKLLAEWSPLLTFAQQLAGEEDIHAKAVVVAEAMEWVASRTEIEWDDELASHISDILISEEGEAFVRWILDRMQVNDVDISG*
GOScombined01_1046206614F091957AGGCGGMRGDTTAINVATLRLQWASHSSMASICSFWTVSRDQLIRLRDVHKLPKRHNRSLRRKPEREPEPSRAERLASEGSLDLAPHVAQRAAAVRANWSENIRQHRHYSSASVFEVPIVQVEIEPEDDIDF*
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