Scaffold GOScombined01_100515624

Overview

Basic Information

• Taxon OID: 3300002040
• Scaffold ID: GOScombined01_100515624
• Source Dataset Name: GS000c - Sargasso Station 3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: J. Craig Venter Institute (JCVI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2019
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → unclassified Planctomycetia → Planctomycetia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location

• Location Name: Moorea, Outside Cooks Bay, Polynesia Archipelagos
• Coordinates
  • Lat. (^o): -17.475834
  • Long. (^o): -149.81223
  • Depth (m): 1.4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F049303	Metagenome / Metatranscriptome	147	Y
F090093	Metagenome	108	N

Sequences

Protein ID	Family	RBS	Sequence
GOScombined01_1005156244	F049303	AGG	MSTFLDDPIRVLAVVAAAAVLLVPYLPAVAKRLRAAWASLPSVPKPPADGIGVSDLTMVLDLANRLRLDGHEKATDLAKQLLDAMLEVPQK*
GOScombined01_1005156245	F090093	GAGG	MNVRTIVVIACLYVAFFGLPNIELPNVQPPAPETPDVREPTAEMQKAVADVADICKRMHAFDRLVWMSTWEDCSAIVAGEDKDVSVAFENTLGLRLFTDSTFNVAWSRLANASGRYRGLGEAVEKAFTEVIGNDVRPWSDDLADDVIELYDALAWAGARSE*