Scaffold GOScombined01_100079817

Overview

Basic Information

• Taxon OID: 3300002040
• Scaffold ID: GOScombined01_100079817
• Source Dataset Name: GS000c - Sargasso Station 3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: J. Craig Venter Institute (JCVI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1959
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location

• Location Name: Moorea, Outside Cooks Bay, Polynesia Archipelagos
• Coordinates
  • Lat. (^o): -17.475834
  • Long. (^o): -149.81223
  • Depth (m): 1.4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F047987	Metagenome / Metatranscriptome	149	Y
F073577	Metagenome / Metatranscriptome	120	N

Sequences

Protein ID	Family	RBS	Sequence
GOScombined01_1000798173	F047987	N/A	TLQQGDGTISTAGEMNITAEVYSTAVNYDLNADTGAIITIPFKVIQPTASGAPSGTAFKFEFMDGISNTSW*
GOScombined01_1000798174	F073577	AGGAG	MKVKMFDKEWEVKNPTYKEKRELWKLNTMTFVGEELNQDKYFELLERVEEISGLNPEDYVNKDDEKLGMSNIDSLLQQIFLSYMGLSDDSKKA*