Scaffold GOS24894_10390451

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold GOS24894_10390451

Scaffold GOS24894_10390451

Overview

Basic Information
Taxon OID	3300002033 Open in IMG/M
Scaffold ID	GOS24894_10390451 Open in IMG/M
Source Dataset Name	Marine microbial communities from the Sargasso Sea - GS000a &b
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	J. Craig Venter Institute (JCVI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1881
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location
Location Name	Sargasso Sea
Coordinates	Lat. (^o)	31.175	Long. (^o)	-64.32433	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F043451	Metagenome	156	N

Sequences

Protein ID	Family	RBS	Sequence
GOS24894_103904512	F043451	N/A	MITGKCILVETMANIQPWLYPPHPSPDRVAYTPTRSAHILEYQEEMIDAEGNVYWKTVDSTTLSGATSVKEFLEQIKDFYESKSLERIKYSFDNPEHYE*

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