Scaffold GOS24894_10027535

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold GOS24894_10027535

Scaffold GOS24894_10027535

Overview

Basic Information
Taxon OID	3300002033 Open in IMG/M
Scaffold ID	GOS24894_10027535 Open in IMG/M
Source Dataset Name	Marine microbial communities from the Sargasso Sea - GS000a &b
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	J. Craig Venter Institute (JCVI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	883
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location
Location Name	Sargasso Sea
Coordinates	Lat. (^o)	31.175	Long. (^o)	-64.32433	Alt. (m)		Depth (m)	5
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F058913	Metagenome	134	Y
F080142	Metagenome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
GOS24894_100275354	F058913	N/A	MKLTKDEARFLDDKWSDFFYYFQVEDMFEKDQELYRSIGRKLSEVKQ
GOS24894_100275355	F080142	GGAGG	MKVGAGEFIKKDSGEVIWGSEAFIDEVFKALYGNEYEYEVWSYNDALQKIKNLVQQVEDN

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.