Scaffold MIS_10015784

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold MIS_10015784

Scaffold MIS_10015784

Overview

Basic Information
Taxon OID	3300002026 Open in IMG/M
Scaffold ID	MIS_10015784 Open in IMG/M
Source Dataset Name	Sinkhole freshwater microbial communities from Lake Huron, USA - Flux 5k+
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Michigan
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	7945
Total Scaffold Genes	13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (23.08%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Sinkhole Freshwater → Sinkhole Freshwater Microbial Communities From Lake Huron, Us

Source Dataset Sampling Location
Location Name	Middle Island Sinkhole, Lake Huron Michigan, USA
Coordinates	Lat. (^o)	45.19843	Long. (^o)	-83.32721	Alt. (m)		Depth (m)	23
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F093370	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
MIS_1001578410	F093370	GGAG	MKQPIPRNGIGPLKVGNRVQIVPEWQDPGDDQYERFVIEAPDDCTRVRIQAHVPKLIFQPTEWIEADHLLLLPTDNQ*

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