Scaffold MIS_10013673

Overview

Basic Information

• Taxon OID: 3300002026
• Scaffold ID: MIS_10013673
• Source Dataset Name: Sinkhole freshwater microbial communities from Lake Huron, USA - Flux 5k+
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8608
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (54.55%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Dependentiae → unclassified Candidatus Dependentiae → Candidatus Dependentiae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Sinkhole Freshwater → Sinkhole Freshwater Microbial Communities From Lake Huron, Us

Source Dataset Sampling Location

• Location Name: Middle Island Sinkhole, Lake Huron Michigan, USA
• Coordinates
  • Lat. (^o): 45.19843
  • Long. (^o): -83.32721
  • Depth (m): 23

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022145	Metagenome	215	Y
F034486	Metagenome / Metatranscriptome	174	Y
F054439	Metagenome	140	Y

Sequences

Protein ID	Family	RBS	Sequence
MIS_100136733	F054439	AGG	MSHRTRGKTTIKQMAYARRIFGGQGKCKKQIALDVGYSPNTSNSVKSHIEDKPGFQMAMTALAVDSNNLALAAMYEFKQRGFKDFSNKDLVGALNAIGNAWAKFNAEPKVKEPTENSNKLRTVILQQIENQHQVVAPQTTQVVQIAPLDGALDF*
MIS_100136738	F034486	N/A	MEENEQSLKQKKIALAASEHAPVIIELMKDCMAQIPIVADTEWKTIVNAITLEVQGTMLRTMVDHLEGIRNGSLHEQK*
MIS_100136739	F022145	N/A	MDAREIKKKGYTVQIGYSKKAKEKKLMKFITKSGDSFEISAEEMSSMLIGGVNSNTLEATFVESDRINVVEVGRQIQCVLEKDFKKGEIININYTHPYPLEFALIEQAYKIAKIDMSIPAKVLTQEYIKKVKSQLKPEMTNFITKFYKSFKNLVLK*