Scaffold MIS_1116620

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold MIS_1116620

Scaffold MIS_1116620

Overview

Basic Information
Taxon OID	3300002024 Open in IMG/M
Scaffold ID	MIS_1116620 Open in IMG/M
Source Dataset Name	Sinkhole freshwater microbial communities from Lake Huron, USA - Flux 1k-1.5k
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Michigan
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1104
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Sinkhole Freshwater → Sinkhole Freshwater Microbial Communities From Lake Huron, Us

Source Dataset Sampling Location
Location Name	Middle Island Sinkhole, Lake Huron Michigan, USA
Coordinates	Lat. (^o)	45.19843	Long. (^o)	-83.32721	Alt. (m)		Depth (m)	23
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F089552	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
MIS_11166203	F089552	AGGGGG	VNRNPTRESERVRIEKSFDVFGLSEAHRALILEALDSDAWDWFKDCDGCTVVSELHWPTKYFPPCLRHDFDWGTGHDGLTMSKNFFALQRAYGVPRWRSGLRTGAVTVVWYAWQKWKKPNL*

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