Scaffold JGI24746J21847_1042897

Overview

Basic Information

• Taxon OID: 3300001977
• Scaffold ID: JGI24746J21847_1042897
• Source Dataset Name: Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 631
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: Kellogg Biological Station, Michigan, USA
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008703	Metagenome / Metatranscriptome	329	Y
F091065	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24746J21847_10428971	F008703	GAG	MSTLQDALNQIKDPTVADAKTQFEQLINEGKAASEAFIKSSAEQLEQWTIDVSNKKMSQEEFDNLVSAQAILAKSFVASQALAAQERAEKL
JGI24746J21847_10428972	F091065	N/A	TVTKSSSQVRVQQLKDAHLAFIDHHTCVGGTPAAWDQASFDSEVAKITQQFTDAEAAESKAVPARKEFIKNSAKLFQRDAALVRKQHCLSPTFAANKKKQLQQNYDLVLQQQTPH*