NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold GOS2246_10162346

Scaffold GOS2246_10162346


Overview

Basic Information
Taxon OID3300001974 Open in IMG/M
Scaffold IDGOS2246_10162346 Open in IMG/M
Source Dataset NameMarine microbial communities from Upwelling, Fernandina Island, Equador - GS031
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterJ. Craig Venter Institute (JCVI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1499
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location
Location NameUpwelling, Fernandina Island, Equador
CoordinatesLat. (o)-0.3011111Long. (o)-91.651665Alt. (m)Depth (m)12
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F060833Metagenome132N

Sequences

Protein IDFamilyRBSSequence
GOS2246_101623463F060833GGAGGMPEEIIGTLTDFEVTETYVIKARTREEAYQMVADNDFKYGIQRHQVRIEPNY*

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