Scaffold GOS2246_10096978

Overview

Basic Information

• Taxon OID: 3300001974
• Scaffold ID: GOS2246_10096978
• Source Dataset Name: Marine microbial communities from Upwelling, Fernandina Island, Equador - GS031
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: J. Craig Venter Institute (JCVI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1694
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location

• Location Name: Upwelling, Fernandina Island, Equador
• Coordinates
  • Lat. (^o): -0.3011111
  • Long. (^o): -91.651665
  • Depth (m): 12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002745	Metagenome	533	Y
F012510	Metagenome	280	Y
F090861	Metagenome	108	N

Sequences

Protein ID	Family	RBS	Sequence
GOS2246_100969782	F012510	AGGAG	MRTFKEHLSEVKTYPGKGWLMDGPDIKPKDIIWRSKVHHWDNTVRSDNTRFIITKTGKGKDKFQMWAMSDKSGEVLFHFGDKPTLDAAKEFASIRKWQEKK*
GOS2246_100969783	F090861	AGGAG	MKTFKELKDKNEGYQEDQNLADLVGDEASDMINALKKGDVRKAKALYKAIGRLLK*
GOS2246_100969785	F002745	GAG	MKSFKGYLTEFAQLSPSELVFDVHTGNSSSLKIPISGPMFKRIWPDTIRATVFHATDNLEKLGKLEGGKKSISAFFSMMSRYMETGVATGGGIVVEMEADVLISARDDIMSQVDTQGRRWVEMSWFANAQLGRTGPEFGKVEKDLNWLIKNLVIKHLSPILGKTEVKQMGEFEIWGDIKRHIKGDGKLLRLLIKEYFDGVEGILKKHKKIMSHIFYSYAKSKRMTDNSWDEQIVNNIKVKKVHLIDFTTKAPSLQDKLDSDKEYAESKSGQ*