Scaffold GOS2217_10133178

Overview

Basic Information

• Taxon OID: 3300001973
• Scaffold ID: GOS2217_10133178
• Source Dataset Name: Marine microbial communities from Bermuda, Atlantic Ocean - GS001
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: J. Craig Venter Institute (JCVI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1809
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location

• Location Name: Bermuda, Atlantic Ocean
• Coordinates
  • Lat. (^o): 32.166668
  • Long. (^o): -64.5
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001993	Metagenome / Metatranscriptome	607	Y
F023880	Metagenome / Metatranscriptome	208	Y
F105361	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
GOS2217_101331781	F001993	N/A	YKMKHLGALCPNRSVANDEEFYELYSKFRDVIEETNYNIDIVDCLTALHCAMEDFEMYA*
GOS2217_101331783	F023880	N/A	MELTNIPEDSLKQWTNMPPISEELYDELVKEFNNERKYFFNDSYILED*
GOS2217_101331784	F105361	GAGG	MNKRATETNLNKEEFEQLKEAYVSTIVDSMSQKDLVDYVKTDYYNSLDKYNEFDLFEDIKYTLDEDFLDEMLLTIKENRRG*