Scaffold GOS2217_10129464

Overview

Basic Information

• Taxon OID: 3300001973
• Scaffold ID: GOS2217_10129464
• Source Dataset Name: Marine microbial communities from Bermuda, Atlantic Ocean - GS001
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: J. Craig Venter Institute (JCVI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1243
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location

• Location Name: Bermuda, Atlantic Ocean
• Coordinates
  • Lat. (^o): 32.166668
  • Long. (^o): -64.5
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013187	Metagenome	273	Y
F105336	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
GOS2217_101294642	F013187	AGGAG	MPTKDKKKPTWAWIYGDEMPELWEHFGFPYPDPDDRIKIKFVKYESKEMQRG*
GOS2217_101294647	F105336	AGGAG	MKLQQQITTINQILNDLERKVEEMEQQEYMTYDLGKDLQNISFMIDMLREEKKKRKS*