Scaffold GOS2216_10084277

Overview

Basic Information

• Taxon OID: 3300001972
• Scaffold ID: GOS2216_10084277
• Source Dataset Name: Marine microbial communities from the Sargasso Sea - GS000d
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: J. Craig Venter Institute (JCVI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1675
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location

• Location Name: Sargasso Sea
• Coordinates
  • Lat. (^o): 31.175
  • Long. (^o): -64.32433
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001478	Metagenome / Metatranscriptome	687	Y
F085742	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
GOS2216_100842772	F085742	N/A	NSQFINWTNSKVLDVTGSKDEEGNAVGVAGNTGKDNQKWQVLYLDQADKTRTKGKNEEFGFHINRPFYIRSRLPFQRVLECHGANNVWLKRWRANTTAQQWYFDEVSKTLKNNHWKSHSLDIQSNGASTNIRCTGTNSRWW*
GOS2216_100842774	F001478	GGTGG	LFRLDGAFIRNIKNDKVVDVQGGLDGENKNIIVNGFSGKVSQQWDIMYVDEWKGEPKKGELNERFGLYVERDFYVVSELPDARYLDLINNRNMVIKVSNGRNTQKWYFHQQSLTIRTRYNNQSWDIQNSGRTDNMQIWSTNSGWF*