Scaffold GOS2215_10142107

Overview

Basic Information

• Taxon OID: 3300001971
• Scaffold ID: GOS2215_10142107
• Source Dataset Name: Marine microbial communities from the Sargasso Sea - GS000c
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: J. Craig Venter Institute (JCVI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1921
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (12.50%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location

• Location Name: Sargasso Sea
• Coordinates
  • Lat. (^o): 32.174835
  • Long. (^o): -64.01017
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F048363	Metagenome	148	Y
F090493	Metagenome	108	N

Sequences

Protein ID	Family	RBS	Sequence
GOS2215_101421076	F048363	N/A	MSKLPNPRELVLDKEVKVSNGIKGHQYREKNQLKRKYFEIHDLEI*
GOS2215_101421077	F090493	GAG	MYYPAFIVFVITLIPLFFTKLLFIANWERPKDLNGIDARKIIFWGYVFGMVLPIGLVAFRGYII*