Scaffold GOS2215_10123244

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold GOS2215_10123244

Scaffold GOS2215_10123244

Overview

Basic Information
Taxon OID	3300001971 Open in IMG/M
Scaffold ID	GOS2215_10123244 Open in IMG/M
Source Dataset Name	Marine microbial communities from the Sargasso Sea - GS000c
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	J. Craig Venter Institute (JCVI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1574
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location
Location Name	Sargasso Sea
Coordinates	Lat. (^o)	32.174835	Long. (^o)	-64.01017	Alt. (m)		Depth (m)	5
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003898	Metagenome / Metatranscriptome	463	Y
F009988	Metagenome / Metatranscriptome	310	Y

Sequences

Protein ID	Family	RBS	Sequence
GOS2215_101232443	F003898	AGG	MVKMDSIKVTGISTSLGVVYWTDIISGVLMCIMFAIQIYYLYLKTKKIKES*
GOS2215_101232444	F009988	AGGAG	MDWLNLENAAYLLAIILGGMATMVATKYRIILKEIKEVAEKYHEASKDGKISKAEQQAIAKECMDVLSAAVKLVWKF*

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.