Scaffold GOS2215_10110077

Overview

Basic Information

• Taxon OID: 3300001971
• Scaffold ID: GOS2215_10110077
• Source Dataset Name: Marine microbial communities from the Sargasso Sea - GS000c
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: J. Craig Venter Institute (JCVI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1706
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location

• Location Name: Sargasso Sea
• Coordinates
  • Lat. (^o): 32.174835
  • Long. (^o): -64.01017
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004764	Metagenome / Metatranscriptome	424	Y
F018197	Metagenome	236	Y
F068937	Metagenome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
GOS2215_101100773	F004764	AGGAGG	MNYANFGLEKNVEILSAHHVERFTHLRDNEQYQDADSIAQEYVCKGEVENDNYQWLYVNYQFEEAN*
GOS2215_101100775	F018197	N/A	MNTELPQETNIKEWTNMPPISEELYQELVKEFNNERKYFFNDSYTIED*
GOS2215_101100776	F068937	GAGG	MNKRATEYNLNKEQFEQLIDKYITTVVDSMSTEDFQEYVRNDMWNYLSDATFSGVLNEIKYTLDDEMLEEFVTEIKGQSEGKNV*