Scaffold GOS2215_10079233

Overview

Basic Information

• Taxon OID: 3300001971
• Scaffold ID: GOS2215_10079233
• Source Dataset Name: Marine microbial communities from the Sargasso Sea - GS000c
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: J. Craig Venter Institute (JCVI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12723
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (31.58%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location

• Location Name: Sargasso Sea
• Coordinates
  • Lat. (^o): 32.174835
  • Long. (^o): -64.01017
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003751	Metagenome / Metatranscriptome	470	Y
F004325	Metagenome / Metatranscriptome	443	Y
F027869	Metagenome	193	Y

Sequences

Protein ID	Family	RBS	Sequence
GOS2215_100792333	F003751	AGGAGG	MATYKSDAGAILQPGNQINSLSAFNHEGVFGWPGIEAFEQVGYVKVSNLAADKASYKSFNITVPSPDRRVSDRVRDDRTSLVVKASTDRPAYVYGASIAIAQDTPSGGLASFPASPITADLGGTTTELLLLGPDNGGNPIGVPATQALGNAAASSTLTAASSLFAQGSENVTLAKIPFWTAVTTAGIDDQDAANSMLYKVTADTTFKVYNVDAVTGTTVSGDGVFISSDDSDAGRAAYIVCRVNYLRPSKAVTWDDVSSFVDFASQVGGTDS*
GOS2215_100792336	F027869	N/A	MEHKKAKKAVKMAEKAMEMMELEDAMEEMSKPDLQPVDGEINPMGRIGTVPPSTYSLSNMLNGTTTQSVINPET*
GOS2215_100792337	F004325	N/A	MKKKKSTTEKADQFLSGLGTAGGAIGSPQLMGFGGTDIQNQVMSGNIDEYASIRMRQGDTRIEEAAAMPSDLDASYLKLNLPGSPLPTNGLLAPQNIIGAQQTQDMIMSQEQMFLAQYLPAAGLSQLPVGQPPLESEKDKK*