Scaffold GOS2215_10018932

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold GOS2215_10018932

Scaffold GOS2215_10018932

Overview

Basic Information
Taxon OID	3300001971 Open in IMG/M
Scaffold ID	GOS2215_10018932 Open in IMG/M
Source Dataset Name	Marine microbial communities from the Sargasso Sea - GS000c
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	J. Craig Venter Institute (JCVI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1456
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location
Location Name	Sargasso Sea
Coordinates	Lat. (^o)	32.174835	Long. (^o)	-64.01017	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F016883	Metagenome	244	N

Sequences

Protein ID	Family	RBS	Sequence
GOS2215_100189322	F016883	GAG	MNKSNTTFSKAWLEKKIMCGLCNFGCCNHKSFHVEITEEEQEKYRKKFGLDLELEWSQDGCCDLLSDDGSGCRLGDERPVFCKMYPLEPNKTGRIVLGNWSYLHCPKPQDYELDRIEDGKYHYKLIKPHKNKRDKLILEDDIQNVVKEIWLQSKEALVDTYGEEFYQRIKIDMKQT

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