Scaffold GOS2248_10105415

Overview

Basic Information

• Taxon OID: 3300001970
• Scaffold ID: GOS2248_10105415
• Source Dataset Name: Hypersaline microbial communities from Punta Cormorant, Floreana Island, Equador - GS033
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: J. Craig Venter Institute (JCVI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1677
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Unclassified → Hypersaline → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location

• Location Name: Punta Cormorant, Floreana Island, Equador
• Coordinates
  • Lat. (^o): -1.2283334
  • Long. (^o): -90.42917
  • Depth (m): .2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003035	Metagenome	512	N
F043691	Metagenome	156	N

Sequences

Protein ID	Family	RBS	Sequence
GOS2248_101054152	F003035	N/A	MAQFDYYLTADTKEAILADLRSKGFEWYDTDDMGSPTGTRDPKKMEIVTVRGVGSCIYLEHLIETPAVVDDEGNVVTPPTFTTTFHANARMREETTFDTAMDPVPTTPANVWL*
GOS2248_101054155	F043691	GAGG	MINLINSIANLVVCIAIFVLIVDIYASTSSPISKYPMFKTFHVKAGLSLTAAGSLFNVLVDVTPAWSEVILNVGLAFLFSWIVIFYQRYFKIERPRITKARR*