Scaffold GOS2248_10042294

Overview

Basic Information

• Taxon OID: 3300001970
• Scaffold ID: GOS2248_10042294
• Source Dataset Name: Hypersaline microbial communities from Punta Cormorant, Floreana Island, Equador - GS033
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: J. Craig Venter Institute (JCVI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4868
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Unclassified → Hypersaline → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location

• Location Name: Punta Cormorant, Floreana Island, Equador
• Coordinates
  • Lat. (^o): -1.2283334
  • Long. (^o): -90.42917
  • Depth (m): .2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F049303	Metagenome / Metatranscriptome	147	Y
F090093	Metagenome	108	N
F091957	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
GOS2248_100422942	F091957	AGGCGG	MRGDTTAINVATLRLQWASHSSMASICSFWTVSRDQLIRLRDVHKLPKRHNRSLRRKPEREPEPSRAERLASEGSLNLAPHVAQRAAAVRANWSENIRQHRHYSSPSVFEVPIVQVEIEPEDDIDF*
GOS2248_100422944	F049303	AGG	MSTFLDDPIRVLAVVAAAAVLLVPYLPAIAKRLRAAWASLPSVPKPPADGIGVSDLTMVLDLANRLRLDGHEKATDLAKQLLDAMLEVPKK*
GOS2248_100422945	F090093	GAGG	MNVRTIVVIACLYVAFFGLPNIELPNVQPPAPETPDVRKPTAEMQKAVADVADICERMDAFDRLVWMSTWEDCSAIVAGEDKDVSVAFENTLGLRLFTDSTFNVAWSRLANASGRYRGLGEAVEKAFTEVIGNDVRPWSDDLADDVIELYDALAWAGARSE*