Scaffold GOS2248_10009617

Overview

Basic Information

• Taxon OID: 3300001970
• Scaffold ID: GOS2248_10009617
• Source Dataset Name: Hypersaline microbial communities from Punta Cormorant, Floreana Island, Equador - GS033
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: J. Craig Venter Institute (JCVI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5123
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium SG8_47 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Unclassified → Hypersaline → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location

• Location Name: Punta Cormorant, Floreana Island, Equador
• Coordinates
  • Lat. (^o): -1.2283334
  • Long. (^o): -90.42917
  • Depth (m): .2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028966	Metagenome	190	N
F044811	Metagenome	154	N

Sequences

Protein ID	Family	RBS	Sequence
GOS2248_100096172	F028966	AGG	MSAYAFVNYVRFKTQADAYTGTPYQNFSINEQRVYDSITYSFAPFAISSGGGARGGDRSSASLVAGTDALSVNLFAEAVQNRYMLEIKTVSLDPLTFADEALVASEIWRVASYDMDSTRVVLKLTSPLDAVKAQVPRRTLSTALVGALPTSGALVVS*
GOS2248_100096173	F044811	GGTGG	MWRHWIGLPHKFRADPRNGHAADCLIMTWNVLEDAGVPRPTFDPIWLDLAESGRHRLLARAYERLTIPLDAPEEYAVTLFSTDRTIGIGVVVDGGLLHVHHRRGVQWMPLDRCKPLEFRKFT*