Scaffold GOS2233_1096618

Overview

Basic Information

• Taxon OID: 3300001969
• Scaffold ID: GOS2233_1096618
• Source Dataset Name: Marine microbial communities from Yucatan Channel, Mexico - GS017
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: J. Craig Venter Institute (JCVI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2757
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (44.44%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae → Haifavirus → Haifavirus tim68 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location

• Location Name: Yucatan Channel, Mexico
• Coordinates
  • Lat. (^o): 20.5225
  • Long. (^o): -85.41361
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001993	Metagenome / Metatranscriptome	607	Y
F004453	Metagenome	437	Y
F004764	Metagenome / Metatranscriptome	424	Y
F014388	Metagenome / Metatranscriptome	263	N

Sequences

Protein ID	Family	RBS	Sequence
GOS2233_10966184	F001993	GGA	MNADELRYKMKHLGALCPNRSVANDEQFYELYSKFKDVIEDTEYDIDIVDCLTALHCAMEDFEMYA*
GOS2233_10966185	F014388	AGGAG	MSSLHHENILEDCFEIAMESFRINNQLTHEQLDELITISKGTYDAICSNAYKLFQDRCI*
GOS2233_10966186	F004453	N/A	MLIDFTEYELETIANAMEDYINYDDENLNTDLLFGGLSVADRVTSINNKIDSILYN*
GOS2233_10966189	F004764	N/A	KCGGSVMNFSLEQNVDILSAYHVERFTHLRDNEQYQDADAIAQEYICNGEVEDDNYQWLYVNYQFEEAN*