Scaffold GOS2233_1020496

Overview

Basic Information

• Taxon OID: 3300001969
• Scaffold ID: GOS2233_1020496
• Source Dataset Name: Marine microbial communities from Yucatan Channel, Mexico - GS017
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: J. Craig Venter Institute (JCVI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1483
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Kanaloavirus → unclassified Kanaloavirus → Kanaloavirus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location

• Location Name: Yucatan Channel, Mexico
• Coordinates
  • Lat. (^o): 20.5225
  • Long. (^o): -85.41361
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002883	Metagenome / Metatranscriptome	523	Y
F014748	Metagenome / Metatranscriptome	260	N
F039683	Metagenome / Metatranscriptome	163	N

Sequences

Protein ID	Family	RBS	Sequence
GOS2233_10204962	F039683	GGAGG	MLYDEILKCYEGETELHANTSFEFGLMNETYWCLFRDHDLLEYAVRKDN*
GOS2233_10204963	F014748	AGGAG	MNIGDRVQTLNTFVPITGEIVDMYKNRVTIADDDAETTDDLLSFHADDLEVV*
GOS2233_10204964	F002883	AGGA	MSTLHHEDLLLQIFDEVQEAFPYLDEEKQIEIANNRFQEMCQ*