Scaffold GOS2236_1098323

Overview

Basic Information

• Taxon OID: 3300001968
• Scaffold ID: GOS2236_1098323
• Source Dataset Name: Marine microbial communities from Lake Gatun, Panama - GS020
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: J. Craig Venter Institute (JCVI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1749
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location

• Location Name: Lake Gatun, Panama
• Coordinates
  • Lat. (^o): 9.164444
  • Long. (^o): -79.83611
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003377	Metagenome / Metatranscriptome	490	Y
F060645	Metagenome	132	Y
F062553	Metagenome / Metatranscriptome	130	N

Sequences

Protein ID	Family	RBS	Sequence
GOS2236_10983231	F003377	GAG	MTDQAKDTMFAIVEKWGFPTLVAIAVGWVLRHDVLLPLVEEHRTFVRSLSETQREISQAVSEQTRLLYALQPRVAGDGKPDAR
GOS2236_10983232	F062553	GGA	MTLDELQAHVWEQLPTVPRTLGGRRIVNRIVSRAVRGWPIPVLEQCDAGETQVVAKHYTKTVERAVKHEYGMGILLTLVLSALVSEVVKILVRWWLERQENREAMRAIASEIGHHD*
GOS2236_10983233	F060645	GGGGG	MRWILTFMLMLVGCVATLPGDDSLTADLAAETARMVVQLRQQIPPTPAPPSDGKCTNCNGRGYVGDGTVKVKCQPCDGTGKAK*