Scaffold GOS2236_1095569

Overview

Basic Information

• Taxon OID: 3300001968
• Scaffold ID: GOS2236_1095569
• Source Dataset Name: Marine microbial communities from Lake Gatun, Panama - GS020
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: J. Craig Venter Institute (JCVI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1670
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location

• Location Name: Lake Gatun, Panama
• Coordinates
  • Lat. (^o): 9.164444
  • Long. (^o): -79.83611
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009135	Metagenome / Metatranscriptome	322	Y
F013524	Metagenome / Metatranscriptome	270	Y
F042296	Metagenome / Metatranscriptome	158	Y

Sequences

Protein ID	Family	RBS	Sequence
GOS2236_10955695	F009135	N/A	MEKGPKYYLQVNLPPNFDEADADTIKADLMAFLNSKNQYGALYGPKSSKKGITIDKVSWRTNED*
GOS2236_10955696	F013524	GGAGG	MKTNNEVVVRLREFTNNNCNTTIDPKLCEDIRYLCDEVERFSHEIVKANNFMDEDHITIQRYKNKLKRCEEKLGNYEPF*
GOS2236_10955697	F042296	AGG	MNLFNKIIKWCGIILYAAFAYAATLPEPVKVYLIVSTRQGEYTIEKIFLIKQNAEKYRDMYKENHNYVVEERSLTE*