Scaffold GOS2236_1085693

Overview

Basic Information

• Taxon OID: 3300001968
• Scaffold ID: GOS2236_1085693
• Source Dataset Name: Marine microbial communities from Lake Gatun, Panama - GS020
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: J. Craig Venter Institute (JCVI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1670
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location

• Location Name: Lake Gatun, Panama
• Coordinates
  • Lat. (^o): 9.164444
  • Long. (^o): -79.83611
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F053831	Metagenome / Metatranscriptome	140	N
F062703	Metagenome / Metatranscriptome	130	N
F063331	Metagenome / Metatranscriptome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
GOS2236_10856932	F053831	GGTGG	MTHWHKINYLGRDFGPFHIRLDYCDEDMSLKDIYGYDDDPEWVEKTAQEIADGDKYFVVLRAKVYLAGVELASHSLGGLLFDSTDEMEAMMKMDYEGIIAEAVDTAKHNLKKMSEAMSGVAA*
GOS2236_10856933	F063331	GGAG	LTQLDPFDLLNDLKKLLERVDGGDQEQARSDLEEIIAQVQADCDEKHRIYLERVERYMNHVDSALKDKKQG*
GOS2236_10856935	F062703	GGAGG	MLKKKIDNSSKKGMMVGYIHQSGDITAIEPGWNMTPLVLAKLLKDLYPNKQEAIGLVDSAVLVPVFRKEDYEYVDGFGGVLESNINFYEENVRNHVGHLFLFMKGAWQYSDNGIDWDPISEVFIDGSGFKFTEVRQAVEAA*