Scaffold GOS2236_1054146

Overview

Basic Information

• Taxon OID: 3300001968
• Scaffold ID: GOS2236_1054146
• Source Dataset Name: Marine microbial communities from Lake Gatun, Panama - GS020
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: J. Craig Venter Institute (JCVI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1984
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (33.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location

• Location Name: Lake Gatun, Panama
• Coordinates
  • Lat. (^o): 9.164444
  • Long. (^o): -79.83611
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001176	Metagenome / Metatranscriptome	756	Y
F001280	Metagenome / Metatranscriptome	732	Y
F076961	Metagenome / Metatranscriptome	117	Y
F105019	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
GOS2236_10541462	F001176	GAG	MSNGTGMDTPPNNEPSGAVTSAEVARKKPSQGKLRSGVSDQRTMRIDRNRHGIRRETTIGPKKTRPKKV*
GOS2236_10541463	F001280	N/A	MAQDSVTEASKMCVECGCENVGSQTGMAKIPGGMLDVTRDGESGLTLNMTATPEQRERFINE*
GOS2236_10541466	F105019	AGAAG	MGKHHDKIAASLEIRKRNHKGPGGKVPGSMNRKKTGYNRVKANNAR*
GOS2236_10541468	F076961	N/A	VEEYLIEKVRKDIIKEIGNLELPKEWKPQQVIDYIIRKIDKK*