Scaffold GOS2236_1029541

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold GOS2236_1029541

Scaffold GOS2236_1029541

Overview

Basic Information
Taxon OID	3300001968 Open in IMG/M
Scaffold ID	GOS2236_1029541 Open in IMG/M
Source Dataset Name	Marine microbial communities from Lake Gatun, Panama - GS020
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	J. Craig Venter Institute (JCVI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1728
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (25.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location
Location Name	Lake Gatun, Panama
Coordinates	Lat. (^o)	9.164444	Long. (^o)	-79.83611	Alt. (m)		Depth (m)	2
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015864	Metagenome / Metatranscriptome	251	Y
F084145	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
GOS2236_10295414	F084145	N/A	MFISCPVSFDLIDAEWYDDVDDAKEDALDWSVELSGENVIVYHALEGDDGDYEFQRLCAV
GOS2236_10295416	F015864	N/A	MIDFRYSTGEELEQFLYEKCKEDHDLLAEIISQYVASLSDSKLDELEDFLVNNFGND*

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