Scaffold GOS2242_1051325

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold GOS2242_1051325

Scaffold GOS2242_1051325

Overview

Basic Information
Taxon OID	3300001967 Open in IMG/M
Scaffold ID	GOS2242_1051325 Open in IMG/M
Source Dataset Name	Marine microbial communities from Devil's Crown, Floreana Island, Equador - GS027
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	J. Craig Venter Institute (JCVI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1921
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location
Location Name	Devil's Crown, Floreana Island, Equador
Coordinates	Lat. (^o)	-1.2161111	Long. (^o)	-90.422775	Alt. (m)		Depth (m)	2.2
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F037178	Metagenome	168	N

Sequences

Protein ID	Family	RBS	Sequence
GOS2242_10513252	F037178	GGAG	MTYLLKTGNLVFKTIHDTGCVDLVAIDKRGKVHLYDVKTALRYQKGNKKGRTINRVLTPLQKKLKVELLMVDLEKERCWIIKHGGREKSLQPTKK*

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