Scaffold GOS2242_1036691

Overview

Basic Information

• Taxon OID: 3300001967
• Scaffold ID: GOS2242_1036691
• Source Dataset Name: Marine microbial communities from Devil's Crown, Floreana Island, Equador - GS027
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: J. Craig Venter Institute (JCVI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1893
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (55.56%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location

• Location Name: Devil's Crown, Floreana Island, Equador
• Coordinates
  • Lat. (^o): -1.2161111
  • Long. (^o): -90.422775
  • Depth (m): 2.2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006217	Metagenome	378	Y
F027536	Metagenome	194	Y
F029123	Metagenome	189	Y
F061779	Metagenome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
GOS2242_10366914	F061779	GGAG	MLPDEMEAEKNRKMILAQADEIEILKRNVRQLQGQLQSALIHNKRLIEQNAEAMVIIGHKQQEIDSMEEV*
GOS2242_10366916	F006217	AGGA	MIELLLAMVEDTNQIQKYCMSKHDHWTGRAACVQELRQTQRKMEVERLRQFLKENPHYRYPGMALPNGKIKPLDVCWGSSRTYGTNKERIC*
GOS2242_10366917	F029123	N/A	MLMSYEVWFGQNGNWFGYHSFKHRMDAVRYELRYLKMFPKLTVEIRRREHAS*
GOS2242_10366918	F027536	AGGAGG	MQVSPDGWRYKVTPIDRVINDCKRKADDAWWDGNDDEARLHEQEQKLYEKDKEEGVLWVPNF*