Scaffold GOS2242_1003107

Overview

Basic Information

• Taxon OID: 3300001967
• Scaffold ID: GOS2242_1003107
• Source Dataset Name: Marine microbial communities from Devil's Crown, Floreana Island, Equador - GS027
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: J. Craig Venter Institute (JCVI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1882
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon TMED97 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location

• Location Name: Devil's Crown, Floreana Island, Equador
• Coordinates
  • Lat. (^o): -1.2161111
  • Long. (^o): -90.422775
  • Depth (m): 2.2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023614	Metagenome / Metatranscriptome	209	Y
F060823	Metagenome / Metatranscriptome	132	N

Sequences

Protein ID	Family	RBS	Sequence
GOS2242_10031071	F023614	AGGAG	MVARAANNLVAFGHTHGIGEDVEMFTIDGGATLANETNPGEAMDFIVRVIEEKCTIIAVGAEDGAGAFRIMVQGSLWTPADLQTAIRALGTTVGANNYNASGATVGAFTF*
GOS2242_10031075	F060823	AGGA	MKAREFTINVPINIKINGDGDPEIDMPSAEPEEQPGQDVLDPNPVMVPPLQQNIELKKAALGKEGDVVDKITQDQDQSDPLEDVDDGKNKLVGVVFAGDDSHLED*