Scaffold GOS2242_1002556

Overview

Basic Information

• Taxon OID: 3300001967
• Scaffold ID: GOS2242_1002556
• Source Dataset Name: Marine microbial communities from Devil's Crown, Floreana Island, Equador - GS027
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: J. Craig Venter Institute (JCVI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2093
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (55.56%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location

• Location Name: Devil's Crown, Floreana Island, Equador
• Coordinates
  • Lat. (^o): -1.2161111
  • Long. (^o): -90.422775
  • Depth (m): 2.2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007119	Metagenome / Metatranscriptome	357	Y
F012719	Metagenome / Metatranscriptome	278	Y
F027814	Metagenome	193	N

Sequences

Protein ID	Family	RBS	Sequence
GOS2242_10025566	F012719	AGGA	MDKYLKWIATAFLMMGAACNSLAIYPAGPLLTLTGGLCWLVVSIMWREAALITTNVVLSAITIVGLLYTNIH*
GOS2242_10025567	F007119	GGA	MNKYQVIKDDKVLKEFDKPMDAAIFALNNEYGPGMLIVTNNREASETWTHFDYKEKL*
GOS2242_10025568	F027814	GGAGG	MSKLKFNDLPKILDWIKEPSHAGHLFIVEQTLKSVKQEQYKVGTKVKFGRANGMKRMGVVVKLGPKKALVDCNGAKWRVPYDLMDVVDE*