Basic Information | |
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Taxon OID | 3300001967 Open in IMG/M |
Scaffold ID | GOS2242_1001127 Open in IMG/M |
Source Dataset Name | Marine microbial communities from Devil's Crown, Floreana Island, Equador - GS027 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | J. Craig Venter Institute (JCVI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1655 |
Total Scaffold Genes | 3 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon TMED97 | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos) |
Source Dataset Sampling Location | ||||||||
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Location Name | Devil's Crown, Floreana Island, Equador | |||||||
Coordinates | Lat. (o) | -1.2161111 | Long. (o) | -90.422775 | Alt. (m) | Depth (m) | 2.2 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F020790 | Metagenome / Metatranscriptome | 222 | Y |
F040861 | Metagenome / Metatranscriptome | 161 | N |
F056151 | Metagenome / Metatranscriptome | 138 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
GOS2242_10011271 | F040861 | N/A | MLEKLKPIKTTPTGIYFRMADGRIGYANHQYARVTVTREGIRNGEYYKEDNKIGDRLYQINSREEINREYDYDGVKKTISGVARIKYNDISEAINALQNFNNKNCGEYAVELRKNKILKQYEEHKALNIKSYLTRNDYNNDLYNKGFSDGVASIEDKLVKLLNNL* |
GOS2242_10011272 | F020790 | N/A | MTSKMMSKKLLQIATFEEKYGKDHGITSVNAMKKYCSDEKYRERVHAFNKASVNTIKNYYKLI* |
GOS2242_10011273 | F056151 | N/A | MRKLYTKHYKSQILNTKKVKLNNNTYIGFNINDLQNIKLKDKQTLNNVIEFNLKGLTFINKNNIQKSTLQFI* |
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