Scaffold GOS2245_1123506

Overview

Basic Information

• Taxon OID: 3300001966
• Scaffold ID: GOS2245_1123506
• Source Dataset Name: Marine microbial communities from Roca Redonda, Equador - GS030
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: J. Craig Venter Institute (JCVI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1064
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium TMED41 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location

• Location Name: Roca Redonda, Equador
• Coordinates
  • Lat. (^o): 0.27222222
  • Long. (^o): -91.63333
  • Depth (m): 19

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003770	Metagenome	469	Y
F007119	Metagenome / Metatranscriptome	357	Y
F012719	Metagenome / Metatranscriptome	278	Y
F027814	Metagenome	193	N

Sequences

Protein ID	Family	RBS	Sequence
GOS2245_11235061	F027814	N/A	KLKFNDLPKILDWIKEPSHAGHLFIVEQTLKSVKEEQFKVGTKVKFGRANGMKRMGVVIKLGPKKALVDVNGAKWRVPYDLMDLIDE*
GOS2245_11235062	F007119	GGA	MNKYQVIKDGKVLKEFDKPMNAAIFALNNEYGPGMSIVTNDKEASETWTHFDYKEKL*
GOS2245_11235063	F012719	AGGA	MDKYLKWIATGFLMLGVGANSLAIYPLGPLATLAGGLCWLAVSIMWREAALITTNLVLSTITIVGLAYTYFH*
GOS2245_11235065	F003770	N/A	LHIFSPLTQTMFKMFAIICAVTLFECNTMYEDPPRIFDTKEQCMVAAQMKKDLTIEMLTDEDGYLTVEHFEVGCEPINNV*