Scaffold GOS2245_1017642

Overview

Basic Information

• Taxon OID: 3300001966
• Scaffold ID: GOS2245_1017642
• Source Dataset Name: Marine microbial communities from Roca Redonda, Equador - GS030
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: J. Craig Venter Institute (JCVI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 975
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location

• Location Name: Roca Redonda, Equador
• Coordinates
  • Lat. (^o): 0.27222222
  • Long. (^o): -91.63333
  • Depth (m): 19

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001993	Metagenome / Metatranscriptome	607	Y
F004453	Metagenome	437	Y
F014388	Metagenome / Metatranscriptome	263	N

Sequences

Protein ID	Family	RBS	Sequence
GOS2245_10176422	F004453	N/A	MDMYTQIFIIMLIDFTEYELETIANAMDDYINYDDEKLDTDLLFGGLSVADRVTSINNKIDSVLYN*
GOS2245_10176423	F014388	AGGAG	MSSLHHENILEDCFEVASESFRINNKLTHEQLEELITISKGTYDAICSNAYKLFQDRCI*
GOS2245_10176424	F001993	GGA	MDAEQLRYKMKHLGVLCPNRSVANDEQFYELYSKFKDVIEDTEYNIDIVDCLTALHCAMEDFEMYAKDE