Scaffold GOS2243_1081775

Overview

Basic Information

• Taxon OID: 3300001965
• Scaffold ID: GOS2243_1081775
• Source Dataset Name: Marine microbial communities from Coastal Floreana, Equador - GS028
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: J. Craig Venter Institute (JCVI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1584
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location

• Location Name: Coastal Floreana, Equador
• Coordinates
  • Lat. (^o): -1.2169445
  • Long. (^o): -90.319725
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033590	Metagenome / Metatranscriptome	177	Y
F033600	Metagenome / Metatranscriptome	177	Y
F072246	Metagenome / Metatranscriptome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
GOS2243_10817752	F033590	N/A	MGKFENKFLSLLKEDEIPAISAEPGDDQAALANTLDDPATAGDLEDVQDNQPNTTRELELLQDWVGNLDEIIDYLNGGTDSVLGVLRTDNKIGTIFDGISDATKSEILDVCERLASLNQIFKNLYLEKHK*
GOS2243_10817753	F033600	N/A	MMKGILFEDLYMYTNKYWKDVKSRHVRPTTKTLADIAKASPETYNKVKADLVPFPGDHAVEQLGSAFKSISDAQYLLNQLFENPTVKSQEKTQKSVNLKLQKIQDLIKSVTNDLDHDSSDNS*
GOS2243_10817755	F072246	N/A	MTNNKTDYSKLARWLCLYEAVNIISEKADKMDSRDAKDCLKPIPISKYINERFPSLLKDLEHEIAASNNPHTRHH*