Scaffold GOS2243_1071609

Overview

Basic Information

• Taxon OID: 3300001965
• Scaffold ID: GOS2243_1071609
• Source Dataset Name: Marine microbial communities from Coastal Floreana, Equador - GS028
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: J. Craig Venter Institute (JCVI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1892
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium TMED8 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location

• Location Name: Coastal Floreana, Equador
• Coordinates
  • Lat. (^o): -1.2169445
  • Long. (^o): -90.319725
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019663	Metagenome	228	N
F034914	Metagenome	173	N
F089521	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
GOS2243_10716092	F089521	AGGA	MKYIIINKWQLKDSKIEPNYYIKEVVDTLEIANAKLKAYQIIETDKNDNYFIVPFNEEALLLTDQVA*
GOS2243_10716093	F034914	N/A	KEAEKTPEGAKVKELELYKQSAINSVFECGVPEQLNIVLEKVLNGVGIVWNKTKALQLENKGYN*
GOS2243_10716094	F019663	GGAGG	MTKSTYPTKYQLEHLKKRINSEIDPLIDQAQLSVKSIVADLTETAELKLAKKIKADVVIKELEDAIANLEIKQRKAQTFFGR*