Scaffold GOS2243_1049963

Overview

Basic Information

• Taxon OID: 3300001965
• Scaffold ID: GOS2243_1049963
• Source Dataset Name: Marine microbial communities from Coastal Floreana, Equador - GS028
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: J. Craig Venter Institute (JCVI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1669
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location

• Location Name: Coastal Floreana, Equador
• Coordinates
  • Lat. (^o): -1.2169445
  • Long. (^o): -90.319725
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011410	Metagenome	291	Y
F015532	Metagenome / Metatranscriptome	254	Y
F023621	Metagenome	209	Y

Sequences

Protein ID	Family	RBS	Sequence
GOS2243_10499632	F023621	GGAG	MMEKRIDNVMKAMREAKDYGCKMIWNNKLQQLFEMRKVKAYERLEDKARMVH*
GOS2243_10499633	F011410	AGG	MKDLKIKLEWSTSDLLVWVILAMGVGLMIVNVVTMVNMYSVIETMWLEIQQVKETNSSLYQFIEAHRDDFN*
GOS2243_10499634	F015532	GAGG	MTLIKENKVRKEIPNRMMSATFALPIDERRVVGILDYVASDTGVTPMAFWIK