Scaffold GOS2243_1042836

Overview

Basic Information

• Taxon OID: 3300001965
• Scaffold ID: GOS2243_1042836
• Source Dataset Name: Marine microbial communities from Coastal Floreana, Equador - GS028
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: J. Craig Venter Institute (JCVI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1538
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location

• Location Name: Coastal Floreana, Equador
• Coordinates
  • Lat. (^o): -1.2169445
  • Long. (^o): -90.319725
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004493	Metagenome	436	Y
F032681	Metagenome	179	Y
F052260	Metagenome / Metatranscriptome	143	N
F087042	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
GOS2243_10428361	F052260	N/A	KPLNDGTKGFRFNFLGKKGIVRRRKLQSNGIKFTKGDCMNAYHIGKTTLYTEQAATNRKLCHFAG*
GOS2243_10428362	F004493	AGG	MQNTITKNNALDFTDTQWGQLIEGNGLLLTWFIEWNKGDRQDANMLEFFTRRYNQSAGCDPWPMKGKVSLDGKYVSEGDDDLEPYFMINTDDGVGYIYPYAFVALPKKSGGHHVVRMD*
GOS2243_10428363	F032681	GAGG	MTKAYSVENIKTVQDLAKRLNIEVGMSTSMAVEEAMTYLTMSFHKRNVDSIKAAELLRWWLSDFQDKELEYFETRVDLAKEVRNR*
GOS2243_10428366	F087042	GGAG	MNIEQICIASFKSMFDERIADGVDLTPKYIEMLVKEHCEPYMIVTQGFTHDLLANALDYMDWDYISREINNVT*