Scaffold GOS2243_1031516

Overview

Basic Information

• Taxon OID: 3300001965
• Scaffold ID: GOS2243_1031516
• Source Dataset Name: Marine microbial communities from Coastal Floreana, Equador - GS028
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: J. Craig Venter Institute (JCVI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1635
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location

• Location Name: Coastal Floreana, Equador
• Coordinates
  • Lat. (^o): -1.2169445
  • Long. (^o): -90.319725
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F043411	Metagenome / Metatranscriptome	156	N
F056150	Metagenome	138	N
F073424	Metagenome / Metatranscriptome	120	N

Sequences

Protein ID	Family	RBS	Sequence
GOS2243_10315162	F056150	N/A	LNNKLIKKIENFILYIGREYKVVELEDFKQDIFILLLNKGEEFIIRLDSENSIKKYVYKLCIFQIISERSRYKTKYYIPSHFSSLEDIETYTNTCFKDEVLKDLINSLEGLDKIMLEHLLLCSGNKQCLAKKTNIHQNTIQYKFKELANKIKQNWSINEFYT*
GOS2243_10315165	F043411	N/A	MIDEKTKRFINEIMKRRLTYNGKRVYIKSLGTKRALVSYYKENDYKMFKVDIKDLADFK*
GOS2243_10315166	F073424	AGCAG	MKLTPKEIKEQKVLFGSKPVNYFVRFMAAKEKWKRLPDYFIKQVIENTLK*