Scaffold GOS2243_1011235

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold GOS2243_1011235

Scaffold GOS2243_1011235

Overview

Basic Information
Taxon OID	3300001965 Open in IMG/M
Scaffold ID	GOS2243_1011235 Open in IMG/M
Source Dataset Name	Marine microbial communities from Coastal Floreana, Equador - GS028
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	J. Craig Venter Institute (JCVI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1818
Total Scaffold Genes	10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location
Location Name	Coastal Floreana, Equador
Coordinates	Lat. (^o)	-1.2169445	Long. (^o)	-90.319725	Alt. (m)		Depth (m)	2
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F056050	Metagenome	138	Y
F058216	Metagenome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
GOS2243_10112352	F056050	AGGA	MNDKKKTTMKDFDDWLSECPVPYEQTCNGLNTTEYYSFDLIDCEMEDDND*
GOS2243_10112354	F058216	GAG	LGLLSRTKEGGLMPRRKKLGQLIKEKHWSVMGLAKSLNITKEHIIKWEKLNQQYKKYKR*

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