Scaffold GOS2234_1034506

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold GOS2234_1034506

Scaffold GOS2234_1034506

Overview

Basic Information
Taxon OID	3300001964 Open in IMG/M
Scaffold ID	GOS2234_1034506 Open in IMG/M
Source Dataset Name	Marine microbial communities from Rosario Bank, Honduras - GS018
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	J. Craig Venter Institute (JCVI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1965
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location
Location Name	Rosario Bank, Honduras
Coordinates	Lat. (^o)	18.036667	Long. (^o)	-83.78472	Alt. (m)		Depth (m)	1.7
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F006348	Metagenome / Metatranscriptome	375	Y
F008889	Metagenome / Metatranscriptome	326	Y

Sequences

Protein ID	Family	RBS	Sequence
GOS2234_10345063	F006348	GGAGG	MNKKYIVENLEFDKKFKNEKEIEDLNFKRVNAIGIWDIEGETDDERVSKLFDKVQDYMGVYLTSLEYCNNRPHPLTAFK*
GOS2234_10345064	F008889	AGGAG	MYTTEQFDRDVQGLRDLIKMCEDLEKEQHEKADRLIKQINGENAFYWRAN*

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