NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold GOS2229_1051125

Scaffold GOS2229_1051125


Overview

Basic Information
Taxon OID3300001963 Open in IMG/M
Scaffold IDGOS2229_1051125 Open in IMG/M
Source Dataset NameMarine microbial communities from Nags Head, North Carolina, USA - GS013
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterJ. Craig Venter Institute (JCVI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1527
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location
Location NameNags Head, North Carolina, USA
CoordinatesLat. (o)35.6Long. (o)-75.82Alt. (m)Depth (m)2.1
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004169Metagenome / Metatranscriptome450Y

Sequences

Protein IDFamilyRBSSequence
GOS2229_10511252F004169AGGMSEDDLKSVLAKYQQKAFELFNQNIVLETQIDTLTNTVNFLSSELEKLKKPKRGTKAEGEFE*

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