Scaffold GOS2229_1038375

Overview

Basic Information

• Taxon OID: 3300001963
• Scaffold ID: GOS2229_1038375
• Source Dataset Name: Marine microbial communities from Nags Head, North Carolina, USA - GS013
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: J. Craig Venter Institute (JCVI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1943
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location

• Location Name: Nags Head, North Carolina, USA
• Coordinates
  • Lat. (^o): 35.6
  • Long. (^o): -75.82
  • Depth (m): 2.1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038416	Metagenome / Metatranscriptome	166	N
F042626	Metagenome	158	Y

Sequences

Protein ID	Family	RBS	Sequence
GOS2229_10383753	F038416	GGAG	MSRNSVLWMQHEESYVHKVEIVHQTEVSCSNGHDTHYMKIREVYDTYGYKEPGRVVCELCGTTFRLMNPTLEE*
GOS2229_10383755	F042626	GAGG	VKKLALLFLCMVSTVHANPYMEAIKLHSAVYKYINSVAPTLYILNACESELYVPTFSYSLEQTYKLALANDDRSKDIVNTIWSTHEYSIGPRLENSLILIKQGLRNEETRSEVIEACAALETTVKNRFHWMYHIMDMR*