Scaffold GOS2229_1018521

Overview

Basic Information

• Taxon OID: 3300001963
• Scaffold ID: GOS2229_1018521
• Source Dataset Name: Marine microbial communities from Nags Head, North Carolina, USA - GS013
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: J. Craig Venter Institute (JCVI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1598
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location

• Location Name: Nags Head, North Carolina, USA
• Coordinates
  • Lat. (^o): 35.6
  • Long. (^o): -75.82
  • Depth (m): 2.1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008547	Metagenome / Metatranscriptome	331	Y
F048960	Metagenome	147	Y
F068778	Metagenome	124	N

Sequences

Protein ID	Family	RBS	Sequence
GOS2229_10185211	F008547	N/A	MSVTIYLTDHNGRKVAFFYRIDSERYNTAPSIIWACRQHPEYQGTAESKECFIEQAKGVIKELNRSPKVCKDCGLTSPKMEAQLTCPDCLINDQ*
GOS2229_10185212	F068778	N/A	MNYLLGNKNIVDWGVFAEVEDSTDPELTQQIELVLPEHIQQEIYKLITDNIDQAKAIEAMAQF*
GOS2229_10185213	F048960	GGAGG	MKIINKLPTPADQIDKEVDKLFNTKLNNFLGYAFPLICASGWLLILLAIFSS*