Scaffold GOS2239_1046336

Overview

Basic Information

• Taxon OID: 3300001962
• Scaffold ID: GOS2239_1046336
• Source Dataset Name: Marine microbial communities from Cocos Island, Costa Rica - GS023
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: J. Craig Venter Institute (JCVI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1271
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Libanvirus → unclassified Libanvirus → Libanvirus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location

• Location Name: Cocos Island, Costa Rica
• Coordinates
  • Lat. (^o): 5.64
  • Long. (^o): -86.56528
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012583	Metagenome / Metatranscriptome	279	Y
F013094	Metagenome / Metatranscriptome	274	Y
F023620	Metagenome / Metatranscriptome	209	Y
F034959	Metagenome / Metatranscriptome	173	Y

Sequences

Protein ID	Family	RBS	Sequence
GOS2239_10463362	F013094	GGAGG	MISAFFTGVVVAIPTSLVMMKLLNSSLFINNSDLADMNQKISVIITQLDDYRE
GOS2239_10463363	F012583	N/A	LMRLSDQVKIKTFDKYIMRGGDQSLQNIEDLCDFGFNMCQLGYDPEQFNDVVIDVICKLIEKLEDKS*
GOS2239_10463364	F023620	GGAGG	MKTALFLTDYDLSTVHYLCSYYIDNANLDRQDVDYITELQNRVENLMEVK*
GOS2239_10463365	F034959	GGAGG	MKIEINKEQLEILKYAVLWYECNDEEEERIVNELETKLYNAQEEDLLRSFTNMGGLN*